Scaffold Ga0056108_1395733

Overview

Basic Information

• Taxon OID: 3300008215
• Scaffold ID: Ga0056108_1395733
• Source Dataset Name: Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus leukodermatus Group 1 BERMUDA.1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 716
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → Candidatus Nephrothrix → unclassified Candidatus Nephrothrix → Candidatus Nephrothrix sp. EaCA (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Max Planck institute for Marine Microbiology, Germany
• Coordinates
  • Lat. (^o): 51.321602
  • Long. (^o): 12.394572

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003194	Metagenome	501	Y
F004579	Metagenome	432	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0056108_13957331	F003194	AGG	MRVLRGVVYMMKSREPRTEPWGTPQEEVHKDEKVLLHLTRKERDDKYDLNQLRTEPWIPNQEERQVSKMLWSMVSKAAERSRRHRHDNFCDPIALMR*
Ga0056108_13957332	F004579	N/A	VNDGGGNGASCVGIKVRTDTTKLSDMVIASFGDGRNLSREGKMFIKDESKVASRVSGVK*