Scaffold Ga0056108_1023146

Overview

Basic Information

• Taxon OID: 3300008215
• Scaffold ID: Ga0056108_1023146
• Source Dataset Name: Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus leukodermatus Group 1 BERMUDA.1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3511
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Max Planck institute for Marine Microbiology, Germany
• Coordinates
  • Lat. (^o): 51.321602
  • Long. (^o): 12.394572

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000301	Metagenome	1337	Y
F013734	Metagenome	268	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0056108_10231461	F013734	N/A	SSLPILEMCGFRFWQFPGFGDHIFQQISTKSHVQIKFGNADLVFNAE*
Ga0056108_10231462	F000301	N/A	VLEILYHHAKFGWAWISPAAGVAKNVDFFVCLSVCLSVTLLNVTDCASDFTMKGLEYRNNFDSVG*