NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114856_1014390

Scaffold Ga0114856_1014390


Overview

Basic Information
Taxon OID3300008125 Open in IMG/M
Scaffold IDGa0114856_1014390 Open in IMG/M
Source Dataset NameHuman tongue dorsum microbial communities from NIH, USA - visit number 3 of subject 763536994 reassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2181
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameNational Institutes of Health, USA
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046431Metagenome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0114856_10143904F046431N/AMQTLVMAAESELTLTPKPETNNIHLKWTGPQNSSYRVYQKKPGVSSFETIGLTDFSNNAIDEEVKVLNIYPQESNTDGRLWPTLNSSQVANIAKVLPKVQVTYLDGQTETIQKTALLKVWMEGRNSKGRR*

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