Scaffold Ga0114359_1019472

Overview

Basic Information

• Taxon OID: 3300008122
• Scaffold ID: Ga0114359_1019472
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample HABS-E2014-0124-100-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2784
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003299	Metagenome / Metatranscriptome	495	N
F003327	Metagenome / Metatranscriptome	494	Y
F004234	Metagenome / Metatranscriptome	447	Y
F015420	Metagenome / Metatranscriptome	255	Y
F071222	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114359_10194721	F071222	N/A	MDKEQIMTIILAEWESLYDQAKESADAFGRKDEATIRAYAQWYAITNLIDKINEENN*
Ga0114359_10194722	F015420	N/A	MKKIINYFTPVGAEQIAFAIAMLIVTTVILSILFLFTFLELIL*
Ga0114359_10194723	F004234	N/A	MNFINLFKRDNTYFSNWKTDYDSDVYISGTIEPFTYNATETDDGDMSHFILNDANLNLLKSKL*
Ga0114359_10194724	F003327	N/A	MTEFTQLAIKVQDEIANGEYTHQKYLQFREWYFQNYEGSKRNAVRDFKMFDLMYGLDVPIKNNDNEDI*
Ga0114359_10194725	F003299	N/A	MKIYKVVYKTFDYWNGPVKLVTRIIEAYDANHVKQLIQKNDDLIMLIEEI*