Scaffold Ga0114359_1000409

Overview

Basic Information

• Taxon OID: 3300008122
• Scaffold ID: Ga0114359_1000409
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample HABS-E2014-0124-100-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21577
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (11.76%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001808	Metagenome / Metatranscriptome	631	Y
F005814	Metagenome	389	Y
F007860	Metagenome / Metatranscriptome	343	Y
F009958	Metagenome / Metatranscriptome	310	Y
F034772	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114359_100040917	F007860	AGG	MKSNYLASLYFIAGFLTSFSLICQGTEPYINLAGVTLFFYLTFSLTEALEELGL*
Ga0114359_100040920	F001808	N/A	LNKAIKKGFKCDETGDTIRITTLDSIPVIVNDTIVWEKFISTKDTVIQYKNVYVPKTRIQLKREYKIKVKTIYKDKVVEKAQARAEGKKNRPKGNLNLLFVGVGIGLLLSYLWKYAKKSLI*
Ga0114359_100040923	F034772	N/A	MKNLIDYFTPTTEEHKSFLKHFLSTLTMFIVLGGMFYCLMYLKAL*
Ga0114359_100040924	F009958	N/A	MENRNLEFWNKGWELTYEFLGWTYSIAGTWEFNDWDEVSEYAFIELDVEISQKWETETDDNLQPHVLGVRILEDLRLEMQEAINSDLAHYNFWEWKTSNDDSNYTFYHEL*
Ga0114359_100040931	F005814	N/A	MELELLSSRINLNHTCLKLQVSIEDIKTKHPNRTDLISSMEQSLHEIKKAMVVYEVLEKEFRVARQMNFNLERLNLEQKQEIQNLKRQIEFNNIDL*