Scaffold Ga0114356_1185999

Overview

Basic Information

• Taxon OID: 3300008121
• Scaffold ID: Ga0114356_1185999
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample HABS-E2014-0110-100-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1598
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 7.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003887	Metagenome	463	Y
F015060	Metagenome	257	Y
F053060	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114356_11859991	F053060	N/A	QDSRLIPLTEAGEPIRKRFIKQYLQERLQEYLALGGLKELIDRRALILANQKLPAPFYWDLWGNLEHLRNAYQEHLAEDLFGPSSDKEEEGEDDNSAVSWDTQ*
Ga0114356_11859992	F015060	AGG	MVELRSGTNTGAQNPSTPDGRDPNIPENIEITGQGEQNVSQGAQVQDPSQQQGQSPAAAQGVYVGGTYPATLTRAGQGTPKYRPPQFAFTTPPARPSRPSQEEFK*
Ga0114356_11859993	F003887	N/A	MRPLDVARNMYLDYTTTQSIKFYNKGVEKLLGEAFNGKLLLTWLIQVQDKANMFTWTSILTIKRKSLTQNFTKITMEEVRAHAQAYQDRSSREAQNSEMLIQCLKASITRTVYNKIYLQREKYIILRKNTLEQVEDGICFLKTIIDNYHSNTRSSTKQIRKQLATLNHYMRNVAKGDVSKLCEHTRELMFELNAADETTNDLLANLIEALKEAPDRKLSKMVIQSSGLMVNEEVRLETRWK*