Scaffold Ga0114355_1105129

Overview

Basic Information

• Taxon OID: 3300008120
• Scaffold ID: Ga0114355_1105129
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1705
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F003212	Metagenome / Metatranscriptome	500	Y
F083706	Metagenome / Metatranscriptome	112	Y
F093237	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114355_11051291	F000821	GGAG	MNKEYLEAKVDLCLKQAEIDIQQQEIARAIKNLERANSALSRIFNLEEGENE*
Ga0114355_11051292	F003212	GGAGG	MKDKWLVMLEIDTVDGDPRGWHWPALLLNDDVKVIESQFKGRVLPTSEGESNE*
Ga0114355_11051295	F093237	AGGCGG	MNYKYTKGEAFRMTNQELLEAVRAREIAPRWVVGTGYKNSRQVAIEYLEEEIAKEREGE*
Ga0114355_11051297	F083706	AGGAGG	MRHVTPRGWFVAGIFFSFAVWGMWEIASHLLWVGDGWQWCENLLTCEEAK*