Scaffold Ga0114355_1047049

Overview

Basic Information

• Taxon OID: 3300008120
• Scaffold ID: Ga0114355_1047049
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1992
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030408	Metagenome	185	Y
F035274	Metagenome	172	Y
F059883	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114355_10470493	F059883	N/A	MTEDNKRYHLIINVDEKYAIVNALAFYHAHHIQGALMDEDEREQYMLAFQEDGPSLVDSLATKVANTF*
Ga0114355_10470494	F030408	N/A	MELYIALIADRTGRYAHVWGSAPTWSQFHDQLEDAGCEVIEDQSEYWDGCDQDEIAEDCLSVHQLLNDTTFTPH*
Ga0114355_10470495	F035274	N/A	MITIGKDELDNAIALFKIDNYYIECKKNVCYLQWVATTEQAREYIDAFLECLDVLIDGQWVDTYGSHEQGTYVSLPDQDYIACRYILATI*