Scaffold Ga0114355_1045296

Overview

Basic Information

• Taxon OID: 3300008120
• Scaffold ID: Ga0114355_1045296
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2045
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024109	Metagenome / Metatranscriptome	207	Y
F034853	Metagenome / Metatranscriptome	173	Y
F047560	Metagenome / Metatranscriptome	149	Y
F058787	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114355_10452961	F047560	AGAAGG	MANVVVSAIATWNGKALNKGKKDVSAFDKQVNKLGKTFAGVFGAQQLFQFSKRAVQAFAADEKAAKSLEVQLRNTGFA
Ga0114355_10452962	F034853	N/A	MPGLTSQPKIKGVRGGGRKTKGRLIYKAWAQDSGKVYQAVLGAINSTAIKFNKSTEIKKAA*
Ga0114355_10452963	F058787	AGGAG	MPAEAVGVKDVLAGLKFIDKDLQDRIRTAIDPLMRNVAAKARSFVPGNAEVLSGWTKEPNPNINYRPFPKYDAGTVKAGIGYNSGDNRTFKNGFKVSNYVYNVSAPGRI*
Ga0114355_10452967	F024109	N/A	IVAVVTKLAASNLVYNISSVSAPAITNAASGDLLTSEITVSILTSWS*