Scaffold Ga0114355_1026562

Overview

Basic Information

• Taxon OID: 3300008120
• Scaffold ID: Ga0114355_1026562
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2950
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014841	Metagenome / Metatranscriptome	259	Y
F058789	Metagenome / Metatranscriptome	134	N
F105048	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114355_10265621	F105048	N/A	DCRVNRERKVVLMILLSWLRGNKPLRVSEGSLRAIRRAQLDKTLAEEADKRRARKMARFSLISKPQ*
Ga0114355_10265624	F014841	N/A	MGFEEEQKKPSAIDDALAEIGRIAFVEPAICTGWVLVSEWMGEGDKDYWTLTLADDQNPDWRHLGLVHHGLKNWEGNDDVGLRDKPSED*
Ga0114355_10265625	F058789	N/A	MGSFTSKAPCREADPWLFDQFNLDLVQPALNYCSRCIFWEECESLVQPKPSFYDGVVAGKVWRNGRILAKLDATSPNRLIVGEEPDEESFDALEIRGSELLGDRDELFLSE*