Scaffold Ga0114355_1024137

Overview

Basic Information

• Taxon OID: 3300008120
• Scaffold ID: Ga0114355_1024137
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5320
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Llyrvirus → Synechococcus virus SSKS1 (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008304	Metagenome / Metatranscriptome	335	Y
F058755	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114355_10241376	F058755	AGG	VGKVKNNKAKLAELKHLKELPALPHVILNLEAEILELESHLDDQKHAFELNRREIKILEQLMAELYTIVEPTRIPGYTDDQMFEANANNEFTVTIGREIQAEIIANGRPSPAKLLNAMSNPQTLESLKLIGLVPKETILLEQKDIVDALKLNNINEPKLIE*
Ga0114355_10241377	F008304	N/A	MTNLVNNTGVVATDTTGVGTARYGPSAAKYGGDKAIFGYGTDNTNNFSLVNLVSNIGVVANDVTGVGTARRYLAAAGYGGDKAIFGYGYTVGNVSMVNLISNIGIVANDVTGVGTARYALAAAGYGNDKAIFGYGYNGSSTLSMTNLVNNTGVVATDTTGVGTARWLLAAAGYSKT*