Scaffold Ga0114355_1015894

Overview

Basic Information

• Taxon OID: 3300008120
• Scaffold ID: Ga0114355_1015894
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4077
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006844	Metagenome / Metatranscriptome	363	Y
F044490	Metagenome	154	N
F084233	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114355_10158942	F084233	N/A	MTLNVEIYEMDYSCSPGGVNCWEVSIDEWCTSDFKTAGDALNYVLDKYPNQELELNVKSLNWYFKEYDLADSL*
Ga0114355_10158946	F006844	AGGTGG	MARWEIEVIFEPTGDYMNFEYETDTEDEDAIFNEVSNQLSIVPNLIEKNEEE*
Ga0114355_10158948	F044490	N/A	MMRIRVLRASKEEKVAVAIGRLLSDFHLDLEKVGFYVAKSLPHTIYRRALEVLQSAEFQENEVEQNRIGYRSDRLY*