Scaffold Ga0114355_1013387

Overview

Basic Information

• Taxon OID: 3300008120
• Scaffold ID: Ga0114355_1013387
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5671
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003663	Metagenome / Metatranscriptome	474	Y
F005177	Metagenome / Metatranscriptome	409	Y
F024549	Metagenome / Metatranscriptome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114355_101338711	F003663	AGG	MLATAIGILDATKDSIFDDEIMGLAGELHERRNELSDETFAKYLFMYSTALSDLVTKVCLSKEEMSVLCATIDEMDNLSETILEEDK*
Ga0114355_101338714	F024549	GAG	MYRLDTYYDGNLEYTFQFADALQAFEAFAKCYDVGFAKELATYNLSLPTGKMYTKNFNRIGLVSAK*
Ga0114355_10133877	F005177	AGGA	MRYRVEIYDEVKSNDLTIHSDQGVDKEYLTEMVFSNVRRFDGNIKAYVYDNKEKKKVTALYLPMEFVPKR*