Scaffold Ga0114355_1008261

Overview

Basic Information

• Taxon OID: 3300008120
• Scaffold ID: Ga0114355_1008261
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6020
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001165	Metagenome / Metatranscriptome	760	Y
F001807	Metagenome / Metatranscriptome	631	Y
F003601	Metagenome / Metatranscriptome	477	Y
F087064	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114355_100826110	F001807	GGAGG	MTVLAIEHTQFTDTHVTVTAVVDEMRLLYRATRLDPEEWAPALCTTTVELDPEEPIPLDEDGFCAYLDHLDPQWQLVECD*
Ga0114355_100826113	F001165	N/A	MTNNKPTIPNSVDPQKLQFMQLTAKMKESADKYGVGFIGGFVAPDGEVFYMSNMNEEDTNALMPEDLK*
Ga0114355_10082613	F087064	N/A	MTTKPQHQYVIGERVAERPKAHGIFAIRQEVKDRIQQYRTQRYGTVVGINIKPNRSGSKQKFLLIKWDHLQSPTEHAQMRICPADQLVKLQAEGYGFQIE*
Ga0114355_10082618	F003601	AGG	MEYTDEQLLAMALANLGEYIHDNSPQYILIEDDPRNEEDYDTWEYGTEPLPHDHTWHSTSIDVEVSPSEAD*