Scaffold Ga0114355

Basic Information
Taxon OID	3300008120 Open in IMG/M
Scaffold ID	Ga0114355_1006391 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8869
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (13.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

8869

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (13.33%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.2538	Alt. (m)	Depth (m)	5.9
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7026

Long. (^o)

-83.2538

Alt. (m)

Depth (m)

5.9

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F012672	Metagenome / Metatranscriptome	278	N
F043910	Metagenome	155	N
F057881	Metagenome	135	N
F075866	Metagenome	118	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0114355_100639111	F057881	GAG	MKQLEIKLPTTLSACTPEQMTRWLMMAEAMKEQREDDITQLLIFQCQLLSLFSGESINKIKRADIESIQGAANHLLQLLVTYKYQEPQSEIVVNGKVYCFEKNFGYVSTGQIIDLKLIEDISQDPCQALAIMYVEKGMEYCQEDDRGRVLNPNENRYKEFKEHFPGDEFLNFFSFFLDLSHKRRLAILGIQMARQRMEMMMMEQDLKIQSGSVGQLSYIDYPKKWESVWQRLHNSLM*
Ga0114355_100639112	F075866	N/A	MADFDFLEDFGISAQDAEQPKNAYDRFIIELSNQLATEFRDYTKKVAQNTGALAASIIPVPTGQLSFRLEAEDYFPFVDEGVNAVGTNNQGSQFSFNYPGVSHNMATAISQWKGLDMSHAYAVASNIKQRGLRPKRITENVINDRVLDRIANDLAEMTGLMFEINFTKNGSNNI*
Ga0114355_100639115	F043910	N/A	MAGELFINGRLVDINQDAPFPLTFNISDIKDLNARKGNKSKTITLPGTKNNTSLMLSVFTLSATENISGTDSDFVDFDPSIKAECQYYQNGLLEFNGVAQLMSCKLMNGVWSFDITLVSDTIDYISRLAKIKINELGFSEYNHALTYDNQQDTWSGIIQLNGSPSSNQDSQGWTGRGYYYGLIDYGFTRPAPSTFGVEHIPPQVFCYEILEKAFNYAGITWNSNFLESQLFKKLLMAYPGGDLPTITQAQADNDSLFTTEDNNLGGFIFNGSFLSYIDPDAPTGFINTFDKQFADNYDCTVTQDNLSQAQTTD
Ga0114355_10063919	F012672	N/A	MAYSDEFIIHLEELAHIYIEECLNHKKEMISNKGDIVMVLDRHIPTIDYFLRIWIPIVRKDKSIHRDTYYAWLNSDDKLKSDTIKKIDDLFKGLAIDIVGNEGKGIFYAKNRLGMHDRQQLETRNVEKFDFE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114355_1006391

Overview

Ecosystem & Geography

Associated Families

Sequences