NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114355_1002342

Scaffold Ga0114355_1002342


Overview

Basic Information
Taxon OID3300008120 Open in IMG/M
Scaffold IDGa0114355_1002342 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12032
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)5.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029387Metagenome / Metatranscriptome188Y
F059777Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
Ga0114355_10023422F029387GGAGMAAEPGGVRLADQQPKFDGGLNDVSDDSALQPNQMRRSNNARLTDYGAVTKRGGTQRSSTAALAAAAVLNGFTFRQDSGTEQILAVCNGVLRTTTYGAFPWTWATQSGALSTTVVPSFAQFRDSGGNDVVYIADGGALNKWSGTALTTNIVGTVACDVIAVHNERLWAAGNTTYPDSIFYSDLNNGDSLGNGGSGGGQIIVRTFGDEKVVGLASINTSLLIFHRRGISRLTGYGQDDLTVAPAAVTADVGTIAPDSIVASNNVAFFISERGLYRCNEAEVAPVGTPDKPDPLLPIIRQLSDSQFANIRAIVNRATKELWITMPGFGCYQYHTVLNAFSGPWDGAYTSPDTTALFETLDADGLPVVLKGDASGWVSLCDAPGVYKDNVAADGTGGTRYAMSVQLHRLYCGDDALTKSLRWGYLTAQLKGSDQCRVEWNTGDNFGSYSLPPSTDETWGGAGTYWGQGTWGGAGSRSYRIPLGGWGYYVDISIIDSGEALPVFSRFQLEAFSLSRR*
Ga0114355_10023423F059777GGAGMASVTRAQLIALTREYMDAVGSTRWSDDTIKTVLNSVYDEEWSNILNAAPFYTFQQLTLTTDSNGQIPFSSLSTGGGDSQKNFYRILSVSDGNVLYNQTEFSYVPLATTTNYLPTYPRLYYYVGTNVQILPVGSGTTIYVAVNYKPTSLSDLASDSSVIDFPGNSELLLTAVASAKLLLKGGAEVSAANNYRALANEERQSLLDDLRRRTINPTMMAYPDQKYDWSGG*
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