Scaffold Ga0114355_1002261

Overview

Basic Information

• Taxon OID: 3300008120
• Scaffold ID: Ga0114355_1002261
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24218
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (20.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000962	Metagenome / Metatranscriptome	820	Y
F028095	Metagenome	192	Y
F041152	Metagenome / Metatranscriptome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114355_100226122	F041152	GAG	MNIVNYIVNNWDNLPKSKFDDVIVVIFKMIQNWDEGYGHHTYEGYGVDKDGNVTWCYSSGCSCSGTPQTEIKKDLKTFIVDDGIDLNVDPSTIDFNSLEVEFNSY*
Ga0114355_100226132	F028095	N/A	MIEQTYMKLQDKVTRPKLTKEKVNRENKHFKRVVDQYINWCKQGGGYEETRETYEDDIIKCLFEFDHDGYYLATFLNENVYIEPDSELVDILDDVQFVVRSLTEEIIGQWTKENFLEIPSNVIGKKVNAKQGYKKFENHYITGIKPETYEVTVSDDINKKGGWIIRYENITFL*
Ga0114355_100226133	F000962	N/A	MNIHVPDEIKNKYPHMEFRGKQRTINDRTVIEAYNHATEQNFYYSFDEDFFWFAGQIPDYKLPKVS*