Scaffold Ga0114354_1023449

Overview

Basic Information

• Taxon OID: 3300008119
• Scaffold ID: Ga0114354_1023449
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0110-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3302
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 7.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001059	Metagenome / Metatranscriptome	790	Y
F006264	Metagenome / Metatranscriptome	377	Y
F025723	Metagenome / Metatranscriptome	200	Y
F098944	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114354_10234491	F025723	N/A	NEEISNAKFHHVDLSLSPRLRVRLINEMIDQHILWAYTWGIPVVCSTSIRAEHDGFMKIHKKRGFTVNGSYAWLRTEKGMECLKK*
Ga0114354_10234492	F098944	AGG	MFEEIRPEGSTVSSEEIKQRARDYAKAKRAQKKAMKLATGQIEPKAIETVPVVDEFDMTAFVPRSQVKAGRPKSIVNKVTEYGALFNKLNDERTSRGLPPLKTAMEVLIDAMQSDELDIKDKAKIADKLAPFESSRAPIISVEHIQNVTREDEGDAEDALKDFMESLRKV*
Ga0114354_10234496	F001059	AGGA	MATYDIDSLKADLPTAKELAQFVYDKVNVSLDLVGKNKEEQYTVAKNALEGKKIPSEYLTEENPYVDKKDQIPCDPVRKLPKRDIDLPDEDSLVHFFGATNMPHPLDPQSDKKVHINFKKYNNGVLTYQIMGPLEQIPVGTKVNKYGQTTPEKYTWLDPRTAELVMRRADGTLTEKGRGLYTFLVGEKGGGVWSLIDRDIVSISAKNIADPWA*
Ga0114354_10234497	F006264	N/A	MEDPSKIFQSKLSSQAEVCARKALEWLQKDLQGPQKLQPDEVYYLSYAAQVLLNIRDNYGKK*