Scaffold Ga0114354_1003193

Overview

Basic Information

• Taxon OID: 3300008119
• Scaffold ID: Ga0114354_1003193
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0110-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7857
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 7.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014714	Metagenome / Metatranscriptome	260	N
F024719	Metagenome / Metatranscriptome	204	Y
F027758	Metagenome	193	Y
F034906	Metagenome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114354_100319310	F024719	GGAG	MTNVVELPNRNKITVVFYEVSDPQNIAVWGGESPREALDWYRRSPAGSKIWVSQYETDEEEARLVLDLIEITPIVLATIADSIDRWSK*
Ga0114354_100319311	F034906	GGAG	MSKLNKRLQSAADQAVRQRNYQRARQRAFTRLANAFPDIYRAYLEEEKMADENMGKKWLDLDGNTSLANTRTQ*
Ga0114354_100319317	F014714	AGGTGG	LGIELKEPELLDYLKEFYYSDLEKSEEFDNWDCISLEHKMFIELKSRKTHYPDLLIEESKYQGLIMAAGIRSLTPWYINATPEGVWGFNLSTIPQPKWEDKWLPITTEFANKASRTKLVGFLKLEDGILF*
Ga0114354_10031935	F027758	AGG	MLIDLFLVSFWVFGFFFLAGGLAWLADRLASFHLDGMERVRKLQAKEKEGEGAR*