Basic Information | |
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Taxon OID | 3300008119 Open in IMG/M |
Scaffold ID | Ga0114354_1003193 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0110-C-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7857 |
Total Scaffold Genes | 20 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (70.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.8271 | Long. (o) | -83.1945 | Alt. (m) | Depth (m) | 7.9 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F014714 | Metagenome / Metatranscriptome | 260 | N |
F024719 | Metagenome / Metatranscriptome | 204 | Y |
F027758 | Metagenome | 193 | Y |
F034906 | Metagenome | 173 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114354_100319310 | F024719 | GGAG | MTNVVELPNRNKITVVFYEVSDPQNIAVWGGESPREALDWYRRSPAGSKIWVSQYETDEEEARLVLDLIEITPIVLATIADSIDRWSK* |
Ga0114354_100319311 | F034906 | GGAG | MSKLNKRLQSAADQAVRQRNYQRARQRAFTRLANAFPDIYRAYLEEEKMADENMGKKWLDLDGNTSLANTRTQ* |
Ga0114354_100319317 | F014714 | AGGTGG | LGIELKEPELLDYLKEFYYSDLEKSEEFDNWDCISLEHKMFIELKSRKTHYPDLLIEESKYQGLIMAAGIRSLTPWYINATPEGVWGFNLSTIPQPKWEDKWLPITTEFANKASRTKLVGFLKLEDGILF* |
Ga0114354_10031935 | F027758 | AGG | MLIDLFLVSFWVFGFFFLAGGLAWLADRLASFHLDGMERVRKLQAKEKEGEGAR* |
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