Scaffold Ga0114354_1002423

Overview

Basic Information

• Taxon OID: 3300008119
• Scaffold ID: Ga0114354_1002423
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0110-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13978
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (75.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 7.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030940	Metagenome	184	Y
F053903	Metagenome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114354_100242316	F053903	AGGA	MASIKVKGTISRVFYEGKGIELTEAYTTKAGETINKRYTVWLKTPTTFDIGDELQVEGLYSSEIDNWINKEGEAKQSIKVSINNPYITPADPAQVVKSLFEPTHEPSPF*
Ga0114354_100242325	F030940	AGGA	MWLDIARRTLAVIILKVTGIFVGGAVIGLEVAQAVAMAAFAGIIDVAQELSRSYLADGQIDADEINKSFGKIADKTDKKG*