Scaffold Ga0114354_1001076

Overview

Basic Information

• Taxon OID: 3300008119
• Scaffold ID: Ga0114354_1001076
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0110-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12922
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (3.85%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 7.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060719	Metagenome	132	N
F075869	Metagenome	118	N
F083690	Metagenome / Metatranscriptome	112	N
F085397	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114354_100107610	F060719	N/A	MNPKHLQINIQDEISADKLKLAYTKRANDRAMYEQENKFSKSTGQPYQRYYVETKVYYTTANIGSECNDITFINGGTTNLVIADVPLLPNQSLRISGNRGELDTTQYQLTFATPINTGNLLIVIRKLYI*
Ga0114354_100107612	F083690	AGGA	MPEITADKIIGKTLFAKKDLDRLNSSLVKIGTIVAGSTVGQVYSYIQRGGKVYWQFIDFNNKPYFVLHTADSFKFSGDVKQAIEEKKQEVEKIAKEQKGSVPYYIEKYGKWILIYGVGAYLVATYIKSIK*
Ga0114354_100107620	F075869	N/A	MKNWILIGLAGLTGWYLLGKSQLANRTKLIFKKLGFANKKFQLTFGVQNPTAQTAKISAITGEVYLGDKLIADFSSFGEQKIAARSESELKIQASPTIGILQLITSKGWLKKGLAYTIKGTGNFDGIVVPFDYKANLI*
Ga0114354_100107624	F085397	N/A	MSQRNKDLPAMPVHPMQDKFGQVILMAGMSKLEITALNILSSQLRKNKIEDLSPEDITFLIKEAYNISEEFCAFIETKSEKESSIII*