Scaffold Ga0114354_1000852

Overview

Basic Information

• Taxon OID: 3300008119
• Scaffold ID: Ga0114354_1000852
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0110-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14939
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (18.75%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 7.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034850	Metagenome	173	Y
F051129	Metagenome	144	N
F052371	Metagenome	142	Y
F091307	Metagenome	107	N
F093533	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114354_100085215	F052371	GAG	LERFKLARVSEKLNTVSIALVVDELIRGMHKLGIKGDKIPNKEELSVMYKSIVEEYPNIKFGELSLAFDLASKGKLDMEAETYQNFSVLYLHRLLRSFARYGMQKLNEIKPVEESKWNPRYVTDDEKIETAFDCYKKFRIWDSIVFGVDVFHILHKQGKIIVEVDDTYDKVLKAMNEKMFEGSRQDKIDIKNKMKDDDYMENQCMRMAVADYFTKLINRG*
Ga0114354_10008522	F034850	AGG	MEEDLILGEGEEVEYVEEEIGYRLTEYISASVEVLTMLETSNPMTREEVEKVQELKKLCIEMLEHSVKSMHGMLFTNDI*
Ga0114354_100085223	F051129	N/A	MTKEDEKFIQDNIYNFECVKIGFMKNLPLHILVGYEQIYRRYLDPGFILTSWCSNCVADMMKRLSNFWDSYQASKLLDAEVVQEPLQVPKKKGRPFKNKQ*
Ga0114354_10008526	F091307	N/A	MKKQVTTNVRIPAEWLKVSINDIMIMVTATINDAEDYVDVQVREIIIPGYHCINILPQFHSSFYELVEQKCMDAFTFKMDSNYDHEYYSDYVL*
Ga0114354_10008527	F093533	N/A	MYYDRIEMTLMVRDEVRATAYPLRCHESIERQRHQWYYFYGLKSIRDWEIFITHKSTMENSAPFRIEKPFPYHIKSKQNESTESGPTDINCEPVNSSGGLEQTVGKRQSQVL*