Scaffold Ga0114354_1000554

Overview

Basic Information

• Taxon OID: 3300008119
• Scaffold ID: Ga0114354_1000554
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0110-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18591
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (85.29%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 7.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001094	Metagenome / Metatranscriptome	780	Y
F001531	Metagenome / Metatranscriptome	676	Y
F008808	Metagenome	327	Y
F050167	Metagenome / Metatranscriptome	145	N
F052382	Metagenome	142	N
F057118	Metagenome / Metatranscriptome	136	Y
F093272	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114354_100055416	F052382	GGAG	MSAYGKRKGATFETSVVKWLRSKDILAERLTKAGAKDEGDVVAFLDGAANILELKATKKLDLPQFWREAEVEAENYAKARGLKEVPYKFVIVKRRQAGIDKAWVVEDFEQWTKRAGK*
Ga0114354_100055418	F008808	GAGG	MDRSIPPCPECGERFANVFEATDHLLEDDDEFDPALVLPNGARLMIGSLLRCLYKYADKPDQIKTITQSTYMTLFTAETQPEAIKDIVEEMIIESQMMEIDNELKQLLEEGK*
Ga0114354_100055421	F001531	AGAAGG	LDWDSIEKWDYIVTAVASEYHRKFPMVELEDIRQSLYQWFTEHPNKLKDWEAIGEKDAKNLIYRSLRNDALDYCQRWKAKSVGYDVTDVHYYEPEIVEALLPPVLRGEYGVTHKLNLGRPGRPSAPAEGGNLTIMMLEVDSGYWKLNKDDRRIIFLRFAENLDFGEIANYLELGTDSAARMRLKRAIRRLVNKIGGYKPYNDVDSSAAELQEEEE*
Ga0114354_100055426	F057118	GAGG	VESKQYRITIKTPATLVYYVSEYDIHKAIDLAIEAPYQEWEVSEFEMPLGSDVDAQEI*
Ga0114354_100055428	F050167	GGA	MKGNTMTTTTIQVEDYLASISLTLADLADELATVQFDVDSVNGYEPKGTILKALPTQSRFKPKSMWVSLGNGKYQHLTGEKGLIAKHSRLEGYTSVVFRP*
Ga0114354_100055434	F093272	GAGG	VSYNPYGVSGSIITPPRDVRSAPAWLGSRSKRFSNLEVRDKEGNLIVAIEDSQAVKLARRTIKNAKPKPDTTPKPLSADELRRIALDERKALMASLLARPAENYL*
Ga0114354_10005549	F001094	AGG	MNTTKLKAIVSTYLRAAVAAVLALYLTGTTDLKALALAGVAAVAGPILKAIDPSATEFGIGSK*