Scaffold Ga0114352_1019676

Overview

Basic Information

• Taxon OID: 3300008118
• Scaffold ID: Ga0114352_1019676
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-100-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1423
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045530	Metagenome / Metatranscriptome	152	Y
F075720	Metagenome / Metatranscriptome	118	N
F086589	Metagenome / Metatranscriptome	110	N
F100357	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114352_10196761	F075720	N/A	FIGGLEMVLGLTKTAITILEYNLSGIVGLFFGIEQWSIVISFYITAHERSLVRHKDTVTEQGAKLANHLTIPLIKNMETLRDMCREGRSVETLNKLKAFESHLIHLIQKPRDQWAQWQLKEHLYSVIESEFPKIIQKLQSSILDHSWELINGICPSLLN*
Ga0114352_10196762	F100357	N/A	MLKFFTAKLKFVDTNCILCKKIIDTIAIERTKETQEMDLDLLEKKTKALHVRLIIKRQTLIAGLKLWYQMPIKIYNEEELLRVKRVIKSVIKLTRRAEEMLKRDVIPV*
Ga0114352_10196763	F045530	GGA	MNNPSTIIKSITEKLEFLNSMEELYQKVQEMLHYLGIKSPSKPNFNYYSELIKRRKQDLAFARWMIQRQYREWFMSHMSKTGLIKTYKSEERIEKVYKTAILEEEAHKYVDEEGPPRKRFSGIYTRQKIQLN*
Ga0114352_10196764	F086589	N/A	MEATLITLDTLLSNMEAELRTDMNINIPLNQELEPSQHGDGD*