NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114352_1004763

Scaffold Ga0114352_1004763


Overview

Basic Information
Taxon OID3300008118 Open in IMG/M
Scaffold IDGa0114352_1004763 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-100-LTR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3270
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)5.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006069Metagenome / Metatranscriptome382Y
F062458Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0114352_10047631F062458N/AMTTRKITSFISSENRQANEAIYNFSVDYPDGILTCRDNETMELNVLSFDMPNTMYNINSTNDHFQITLDNADNRSIHLKHGNYSVKTLLKEFQDLFSQNVIPETSILHTFFGTYADALTIECVYNDTTNTYTFKKVIDLPLGITLPIAFSLYFKPINCGALLGMENDLEHEITPNGMNTGLVNLIDYNKIIVHTENISYYYSNIENLSTISNRQFLSNIIFWKSKADVPPYQIIKYNNEDGGNSFVYKIENKEINSLVLQLRNERGEFLKDAPNYMIVIQYIFNEKDDTNKVLKSIDYYIRQIYDALLFGMNRL
Ga0114352_10047634F006069N/ANSLHIGARQSGKTYSVIQMIKHYENNKIMRDGVEYKLRTHLISPTIQANQIYQSLESLDMKKDAHDDYSDALLLNILDDIKAEKKKYDKYLLYKKYYDKFNKTPENKLDKLYDEEPEIFYMLEEYDYQNPKDIKHEPPKVNIIILDDLLGSDAFTKKTKSVLTNAMIKNRHMGVCFALLVQSIKAVPKNIRLNCSVFQLASFKNKKVILEDIYDEVSNVIGIDQFEELYDHATKKPYGSLIIDTTNGKRFLSNLDSELFIGNKISANNKDDDNSRSKK*
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