Scaffold Ga0114351_1103542

Overview

Basic Information

• Taxon OID: 3300008117
• Scaffold ID: Ga0114351_1103542
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1654
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006543	Metagenome / Metatranscriptome	370	Y
F008236	Metagenome / Metatranscriptome	336	Y
F053106	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114351_11035422	F006543	N/A	LTSDDGLGIITLLGSITLFGVFIMQKFSFNVDVVADALDREVVTEAIRECLADTLPGDVHASVKAGEVKAFSEQGYKVWRARVTGVTADAAGDSANPKKSKRETAEATA*
Ga0114351_11035423	F053106	GGAG	MGKFYIKSGTLEVTLSKRDALEAAISGLLLTNKFDTIDEYFYVDERGYRDYVSADPQTNVIATKSIVRAAGWELSRGDEE*
Ga0114351_11035425	F008236	N/A	ILADGATLPDMWFYTHIYDPRLSMMDKYMAVYASVHNANDKATASLAGFKLFAWCDSDEKIAKKRPKRKAAAEVWRKSLPKLVIIDGEKFVTCPEIRRGRGVVTCTPTKGSVDCNLCVRGLANVLFPSH*