Scaffold Ga0114351_1101764

Overview

Basic Information

• Taxon OID: 3300008117
• Scaffold ID: Ga0114351_1101764
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1673
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054788	Metagenome / Metatranscriptome	139	Y
F060847	Metagenome / Metatranscriptome	132	Y
F077196	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114351_11017641	F060847	N/A	LRALHAGLHLKFLTHTGEHWAICLTWSPDDRRWEYIQTGATDPASAYDIIGYLPVDCSADEAPSYLERTFRQYPKDEVRNMADHVHEYNATAPVAAAIEEALTEALESPALPKKRGRPKKLS*
Ga0114351_11017642	F054788	GAGG	MAVSRAELVTLTREAMDAVGSDRWSDSLIKSVLNVVYDDEWSNLLNASQYYTYGMRTVTTDANGVVAFTSLNNGAGDSQQNFYRILSVSDGNVLYGQTRFQDVPLATTTNYLPTYPRLYYIVGEQVQVLPVASGTTLYVAVNYKPTALSDLGSDASTINFPLGGEWIIANEAGARLLNKGGAESGAAQVLKREAAELRAGMLDDIRRRTINPTMLAYPDQKYDWAGG*
Ga0114351_11017643	F077196	GGCGG	MAREKLVDQQPAMVGGLNDVSDDSALQPDQLRRATNLRLTDYGAATKRGGTQRTSTNALAAAAVLNGFTFQQDGGTNQILAVCNGVLRTTTYGTFPWTFATQSGALSTTVAPDFAQFRDTGGNDVVYIADGGLLNKWSGSALTVDIANTVAVDTLQVHNERLWACGNSSFPDSIFYSALNDGDTLGYGAGGGGQIIVRTFGD