Scaffold Ga0114351_1083647

Overview

Basic Information

• Taxon OID: 3300008117
• Scaffold ID: Ga0114351_1083647
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3314
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013987	Metagenome	266	Y
F027445	Metagenome	194	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114351_10836472	F013987	AGGAG	MIKEEKHRILPALDRAHIEALRQGMITDLDAAGMAMAFTLAGVLDGGTLKPIEEVKYMGQLQQILDKYGLSLFGRKEKPELEVGEDPLEALRQFKTETTDHTNSEPN*
Ga0114351_10836474	F027445	AGG	MECVESEYAIDDLIIAGRVSEWAKHYNAEAIVANRFSGDSVVAKLRQAGINAEVIKGSDYYQACDATLSAMSGGRLAHSNQPDLTTSVNSCIKKANESGAWYIMRRQQSTAAISMVLAVFKAEQYGIRGANQDIVVA*