Scaffold Ga0114351_1038592

Overview

Basic Information

• Taxon OID: 3300008117
• Scaffold ID: Ga0114351_1038592
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7126
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (72.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012105	Metagenome	283	N
F022865	Metagenome / Metatranscriptome	212	Y
F041721	Metagenome	159	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114351_10385924	F012105	N/A	MNAERTDGMRLKTLRTPDGLRVWLVESVEVADCPEWKTGKSRRFPGRDVVAVRKSVVKLNEWARVLRRPYRFRVVVRDSVPVVLKLPKNKTIRIRREAELSRVMRAVERLRAGQGTVVRGVERCDIIRAKWRFKKRGIRFIVRCIGESTWDVQRVTE*
Ga0114351_10385925	F041721	N/A	VRXXXXXXXXXXXTLYDRGCDVSEQQLESLRAFAARERGHLLEHCPPIPVVSDWFLEVDRNGRITGEVISGACTTHVQYDPRFRAVFRHDCTFYDCGLGEWLHVVETFWRQTLRQWQAYRRLGEVLQAAEDCTPETHEQAWRAVYECLGWNPDTAREHYLERRAGK*
Ga0114351_10385927	F022865	AGG	MKKSKQTEKKPMGRPRKHSVQAITCVVKLPPEVVRWIDARYTTRQEGLATIVANAAGVQ*