Scaffold Ga0114351_1032618

Overview

Basic Information

• Taxon OID: 3300008117
• Scaffold ID: Ga0114351_1032618
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3385
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F003863	Metagenome	464	Y
F005558	Metagenome	396	Y
F031792	Metagenome	181	Y
F075748	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114351_10326183	F005558	GAGG	MSDSISWAELAQLTHATQVERFNWCSCEDSQGQEKPYEDCPIDKEERE*
Ga0114351_10326184	F075748	AGGAGG	MNKQEILSIIDSTQSFNAFIEGMDTINGQSLGLVIDVAGVDGEEWTDEECLETIKEIVDLTNAYKNTHTWED*
Ga0114351_10326185	F031792	GGAGG	MSYEPDWNDPVFYAEEFEPPVKCFRCGDTLDRDDIVWADVEGLWQVRGREGNDTAWCVSCLPSEGESNE*
Ga0114351_10326187	F000821	GAGG	MNREYLEAKVDLCLNQAEIDIQQEEIARAIKNLERANSALSRIFNLEEEENE*
Ga0114351_10326188	F001477	GAGG	MSNVYTIHPPKSDLILFYEVVEPDGSNTWGGASAEQCIQWLSLAPANSRVLVSAWDSDEEDAHLVGQTIDITDIVREASL*
Ga0114351_10326189	F003863	GGAGG	MESRQVSGKQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKTWIINPDSRLTVGIHTRANAVPDVAGRTDYESADEGYNGGEA*