Scaffold Ga0114351_1029993

Overview

Basic Information

• Taxon OID: 3300008117
• Scaffold ID: Ga0114351_1029993
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3564
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045703	Metagenome	152	N
F076009	Metagenome / Metatranscriptome	118	N
F090304	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114351_10299931	F076009	N/A	WRVQSLISATDANIDDGKEFDFSVPGAFLAFLQGFVGLALNIVLEEEKYTDKNGAEQTTLRVKRLKKTPADEAF*
Ga0114351_102999310	F045703	GGAGG	MAGGGGAVSLSVAFVYKHRMTSEVLVVDIDRARELDAARPYWKHVSTVDPIVILQLIVKSNGQKRAKIIRELSEQP*
Ga0114351_10299939	F090304	AGGAGG	VSDKHTMPSHLAKLEKDVMELKACNEYLRQKLGQRDDRIRHLIRLGLKTTRPEALDQWQEEEEL*