Scaffold Ga0114351_1028779

Overview

Basic Information

• Taxon OID: 3300008117
• Scaffold ID: Ga0114351_1028779
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3651
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055721	Metagenome / Metatranscriptome	138	Y
F063620	Metagenome / Metatranscriptome	129	N
F076003	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114351_102877912	F076003	N/A	VIIDTLNQSLMTSNWNGYYTAQSRENVRNAIADIMGQMSVEIITDKANFTIDADAGI*
Ga0114351_10287792	F063620	N/A	MTNSITPKVAYIPLEYHMSVEDFLEVWKDMEMKDEPTQEDYDTAVLDRAQSYFHDMRGMFEKYIRLENA*
Ga0114351_10287798	F055721	GGA	MNREEYYKHIEENDFYPEHSHKWIVRTYTKYEGVEALHRCFGVFETQNEAKEFIENYKVKYTTKGFISSVRVFPLCSVVE*