Scaffold Ga0114351

Basic Information
Taxon OID	3300008117 Open in IMG/M
Scaffold ID	Ga0114351_1020442 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0114351_1020442 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7789
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (44.44%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

7789

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (44.44%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.2538	Alt. (m)	Depth (m)	5.9
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7026

Long. (^o)

-83.2538

Alt. (m)

Depth (m)

5.9

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016527	Metagenome / Metatranscriptome	246	N
F078286	Metagenome / Metatranscriptome	116	N
F093866	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114351_102044210	F016527	GGA	MKKVLVLLSLLTALAVTAGDNSNLSVEAGYNNQYIVNGVARSEGTAFVGVGAVKSLKYADVYLGGTLLANGDLDQSHWTLGAGKEVDVWKDVFSARADATVTRHQAGSFGIPNSTEFGAKLALPNKLVTPYVRGSFDIDLDQKGVFVGAERAQKLPFGFVITPAVEYGKVFGDASDYTAVNAKATLTRPFEFSFGVLTPFASVGWYDNNFNAANYNWATREFSGDVVYSGGLRLTF*
Ga0114351_102044212	F078286	N/A	MTKPELYGAKPNDPNTNSAYAINKCILENGSCELDEGIYYIGGEHIDINDPEKVLKSGILWGWIQQHNESGVKLTGKGKGKTILKLSKHLSGRRDLAVNGNQLIMVQAVGSGGDGSVDCKNIVIKGITFDGNYDEINEVKGNELTTAGCTTFGTNTLFEDCEFKGFNVGKDNATSFVIISLLSKNSKDDAKGTTVRRCDFHSPGRNNRYPEHDTEQIVHVQVGGHLAGKVFATGCIVEQCTFRGDAGKTQFSPLAGVSIANTKGALIRHNNFDGFEGMCYYVDTGTNIDTIVEQNSAINVPCFVRLSAQNYVRQYGSEWWAVNYAYHHNLIVLNNNVVTTGKGTWNWKPGKYAAWDGIFLGYSLDRDLPNLSSIFKNIIIEENNLNVSPENMLKNLGGWWPQSNCYGNPTPHGPVPPEPVLGEIKLINNTNKYTSEQEVKKKLTVQERIKRIFKCK*
Ga0114351_10204429	F093866	GGAGG	MNELSKIDMANLVLSEDKKAKIKNVLCTMYGATDVQYRDLSYGICIDVTGTDSFRFVKNAILKTLDVHEETLSVLGESKRTLKASYAYLPEKDKVLNRRLKKTKLGV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114351_1020442

Overview

Ecosystem & Geography

Associated Families

Sequences