NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114351_1018654

Scaffold Ga0114351_1018654


Overview

Basic Information
Taxon OID3300008117 Open in IMG/M
Scaffold IDGa0114351_1018654 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6583
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (12.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)5.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008546Metagenome / Metatranscriptome331Y
F022861Metagenome / Metatranscriptome212Y
F028489Metagenome / Metatranscriptome191Y
F068754Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0114351_10186541F028489N/AMKMIGRELKLKLANDYSKFAVLPMNRGIDSKHVQKMIASLRLQGCVRVVQCCRTNIIEGEEKLYIIDGQHLATALEREGQPIPYIETEVTSEEDLIEKMAYLNNSSKSWDLMNFINAWKMIRPDYMKLFKWKNMYDIEITMLAAIGINNAGIRNTTASIKTGNFQITNPKAEEMCKAFNDIFLKIGMSDRSVKFQFLAAFLQAYGTYNHTKVMSNIEKHMKTVKLLTDGDSTGTYIRTKIFNLPK*
Ga0114351_101865412F008546N/AVLEANSIAGLRFLIDKNWIGMVIMVGINPFLCLPMNHYTIEVKTLKQRALIALAFSLGFAVGVITIRPFFI*
Ga0114351_101865416F068754N/AMISYIGTQLGIFSRIKFMKDTKEMLKLVAAIAEEHYNITDGADGNLNYLWYMYHKGSKKDEFRPFVYMAELMLLKKYNYLNDAEIRNIVSMMKSDDRDNLAIVTLSIQNLRNLRIKEHGIYSKDNKAYKDLNYTYAF
Ga0114351_10186544F022861GAGGMRVICIDASNKPSKVPDNEWVIEGEVYTITRVVRMGLQDNKFGVLLKEVKLSSSSFPYELYDAERFLPIDLLSKAFEETQETVKEADLELI*
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