Scaffold Ga0114351_1014442

Overview

Basic Information

• Taxon OID: 3300008117
• Scaffold ID: Ga0114351_1014442
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8951
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (70.59%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002357	Metagenome / Metatranscriptome	567	Y
F013618	Metagenome	269	N
F018351	Metagenome / Metatranscriptome	235	Y
F020681	Metagenome / Metatranscriptome	222	Y
F028151	Metagenome	192	Y
F053248	Metagenome	141	N
F055549	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114351_101444215	F013618	GAG	MSVFTPEYKLSINGVEYTDVTISDIAHQAGREDIYAQPTPSYIQITLVALNNENYNFQINDGIALQVKDSTNAFKTLFGGNITDITTEVASASSIAETFSYTIIALGSLAKLPKVIYDGTLARDDDGDQMYELLADLFLNNWNEVPASETWSGYDPTVTWANAENLGLGDIDRPGVYEITNRGVNPDTVYNIATLIADSAFGVLYEDSEGRIGYADALHRQNYLANNGYTEISANTAFGAGLKVLTRGADVRNDIILNYGNNFGSQVSTIDLDSIATFGYRGETINTVLHDAIDAQAVADRFISLRSYPRALFDSITFPLTNSAIDDADRDALLGIFIGQPMRITDLPVQIAPTGQFEGYVEGWRWSTRFNELFLTINLSPIEFSTVAVQWEQVSASEAWNTLSGTLTWENAIGAVA*
Ga0114351_101444217	F018351	GGAG	MATETIAYNKTDLRNIYKAFKLMDDQATEEARAQSAALAYFASEEIKQAAKGRTKSGKVAAEVVVDGLSIQPFAEFSLN*
Ga0114351_10144422	F020681	GGA	MVKFRCNFCSANTEFEWLDGYETHEGFRTYQCLKCCAVGVKNEAEAIDTQEPVMRCTKCGSWMFADKECFTCAILTMKEITK*
Ga0114351_10144423	F055549	N/A	MTDYFMRAICFGAIPATQLTGFLIMPNYDYMCDGEGLLIVLDLPMDHKIPHCQVCAAPLRRVYTAVPTIFKGTGWAGKDG*
Ga0114351_10144424	F002357	AGGAG	MAFNLEDYEDVATLNKWFISNYPMGRSDISVISHDAEKGYILVQATLWRDAKDTAPAVSNIAFGSRETYIPNMKKFYVEDTATSALGRAIIILKGSDKTATKDDMRKVETGSSFKEKLEARQNMYGKPGSKSAQIETILRDSFEADKPAPVAWSVGDVVAEIGASTPNEPPACEHGHILKQGISKGGKPYYGYVCKAKQCDAKWAKLTANGKWYFEGGE*
Ga0114351_10144426	F028151	GGA	MNTWLELRDLGLDVAAVMLAIGFIYWIVYEIRDTAFQNGYWKGRADGWNMHRRMITIKKQSDEVFDYDKN*
Ga0114351_10144428	F053248	N/A	LLWRTHENHLNRKAGFTPEHAFWLMTEQKTFPNWIVGDGGIIPSIDPTDDEDDD*