Scaffold Ga0114351_1013275

Overview

Basic Information

• Taxon OID: 3300008117
• Scaffold ID: Ga0114351_1013275
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16883
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (33.33%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012771	Metagenome / Metatranscriptome	277	Y
F017470	Metagenome	240	Y
F027440	Metagenome / Metatranscriptome	194	N
F037195	Metagenome	168	N
F043895	Metagenome	155	Y
F044452	Metagenome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114351_101327510	F027440	GAG	LLKITWHFKSFIRFAGPVGPERTVSFQAPILSVTDLAYYIRRGEALAEIPTEHVTKVKNEDGSVTETKRISNALSDLVQAELLDIAEDASEAYLSKGNTPDYFAAFIYGVSADRETEKSVLKKIDGIKSEIGSLVFALAGEWTEDTARSLGVSDKDAAIAKQSNLIGSLAQLLAKANELSSAKAKREAKKKSV*
Ga0114351_101327516	F012771	N/A	MNSKIKRPTSKVFVVSDDTHKKLKAYAMKMGYKLQYIADEAVAEYLARKESK*
Ga0114351_101327519	F037195	N/A	MNIFNPTNPPQHNPTELLKQAENLLNKTERKQGWPYYDIKHALQFAQMVIKLSKIPSKKATINTLTLRQQPQTVRARLSQGKAFIVDKGIDVLKGQIDPDDMPLVDELAEKVQISVRKVNLIIELVEPVDNILDAMTPLLGGTDEDPFVFNEDIFREQLLEFINTGEIGSQASWQNYTSSAEKYARQLALQDNTLIIETTPNELIIMKMSEEMLKGLE*
Ga0114351_10132752	F017470	GAG	MMRNQILGLRRAGMSVEEVSAALEIDPMVVKLALEATGGSVALRKEALKENPDDITDDVSEQEAKEMMGIIKNIARDEDSGVYARLNAAKYAHGAKRGYHKRHLDLNVGSGELLLKINEAYASASMRARAALGGQSLTAKEITIEAPITVEASVESQPTDHTTQSEPAAPKPRPFKL*
Ga0114351_101327523	F043895	GAG	MKILMIGLSILATETTLVALQQDFDAKLRAISQIESNDNDKAKGRHGELSRYQLKRAVWKQHFPSEKDQRHIPSAARRCAKAHLCWLELRLCVAQRVNNPQPRDVYAAWNIGLEAFSRRDYNFDRLPDSIKQRADRFTNLYTEFRNSQ*
Ga0114351_10132757	F044452	AGAAG	MTNRCLRCLQVIDADRKALGFDRCIKCAPQWQYKGALNFGHKTGGAIQPMHPDAFKVHKRVTARKAKGTNGAAFQQGTCVITIKDA*