Scaffold Ga0114351_1011756

Overview

Basic Information

• Taxon OID: 3300008117
• Scaffold ID: Ga0114351_1011756
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8040
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (61.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037565	Metagenome / Metatranscriptome	167	Y
F044453	Metagenome / Metatranscriptome	154	Y
F078205	Metagenome / Metatranscriptome	116	Y
F105052	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114351_101175612	F078205	N/A	MDIFSIIAGILSWLQVSMGQASVTAGTVYQGAVVIDKVTTENFRGTWSAELQEQGIQTIKGFIIKVENNND*
Ga0114351_101175613	F037565	N/A	MITDTKIMTIDEIYDMILESYFRGELTEGEWMMSPAGVVKVFETECLKHGHSVADYTLYNASLADECECHTDKLRTKFI*
Ga0114351_10117564	F105052	AGGAG	MSHLDEKQTLIDIISGKEKIYSQMIYTMGFQRLVKATSKEEAISKFQNDHPDIIADDENVDCDDHSEVVEMDMEVAELYGE*
Ga0114351_10117569	F044453	AGAAGG	MIEIKLIKTEAGEFLTRQQVIDRLCQYDVYLLMKNINLEDYDWLSDIREQGFKGYKNYTDDELKDEWLESEAGWSNMIADGEQPYDIVSTMGVK*