Scaffold Ga0114351_1006925

Overview

Basic Information

• Taxon OID: 3300008117
• Scaffold ID: Ga0114351_1006925
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10545
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (13.04%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001345	Metagenome / Metatranscriptome	718	N
F001981	Metagenome / Metatranscriptome	608	N
F010395	Metagenome / Metatranscriptome	304	N
F011215	Metagenome / Metatranscriptome	293	Y
F025271	Metagenome / Metatranscriptome	202	N
F035673	Metagenome / Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114351_100692513	F025271	N/A	MTPEYTLQAACVKLFKLLKPHEEGRLFLNLNNPRSRTNGHFLKGIGLTAGVADMTYLSEKGAIFLEFKAEKGKQSLSQKWWQGVVQEAGYRYEVIRSIEDFQRIITNN*
Ga0114351_100692518	F001981	N/A	MTYPTLITIPKSDICKAEIVQIAQQLTDRINDGEVNPVEAHIKLKAIVKALEATIKATEQTVADEASKHGKTFSAFGAEITLKEGSLTPNYEEDEVYADLKAQMKAREELLKMAFRQAGKTAIFDESTGEQVPVCTAKATKASIAVSFK*
Ga0114351_100692519	F011215	N/A	MSLLEQMNADEFRKLLEFKEKFPTIGLDLVKALTEKTLCIQLTLGECIDLSNAIGIPYGQYCNQIFDTFKSKP*
Ga0114351_100692522	F010395	N/A	MPEYHSLRPAKALTNALERLMIAIDNADLEGNHVLLLEYRKACELLGYDPAMAQWAGTKEVHLSSGPNVADPVAVNYFHKLNPEE*
Ga0114351_10069256	F035673	N/A	MVLRFALRQAETVFVYDLLWVLAWGVADPANVPVVLGSNPWPCHICHRNPTPRMDLQMTNDQFIVAQKHRKYWDQYIASLTMRLPPDAVGELQAILTAHGRPPTNWWCADCVKSALQYIYLQADLFAESNQNTINHSLNAPANPEQ*
Ga0114351_10069257	F001345	N/A	VYAESIILELYRSGEIRRACLTITGGNPLWKDLEQEVVLILLEKDPDKITKMQVQGYLRFYIVRLIMNLYRGNNNQFAKKYRHHDERVEVDPETQEEGKDYDSLLDDLWAIAQQEMDSWAKDGAFPYDKELLNLLMQTGNMKAMSRETGIPYRSIIYSIEQAKAKIKTAIESNGYTGLSHPD*