NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114351_1005947

Scaffold Ga0114351_1005947


Overview

Basic Information
Taxon OID3300008117 Open in IMG/M
Scaffold IDGa0114351_1005947 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17142
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (27.27%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)5.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006590Metagenome / Metatranscriptome369N
F008815Metagenome / Metatranscriptome327Y
F035767Metagenome / Metatranscriptome171N
F057370Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0114351_100594710F035767N/AMGYLSAKQINHLKDLQKSNYAGRRSFQGMSLRVVGLADAVIEFAELMEQCTVKERSRVIDSATPIALQIYKSLVPVSSKPHRISTNPFSNKKMKGWAEDDRASMTVQPGNLRKSIIDLSKNLKSYRYAVGAVGPLYKRGTMNKGINSSEGTNGFYAHMVFGSTRAWYNKIVVQARNLSREKVIKTMRNECIFIMQERPKKFWQVL*
Ga0114351_100594712F057370N/AMKLRLIKTWNGKPVGATGVFLSDFGAQLVADGIAEHLDDDFVVEQMPEKKVQEAPQPIYIPVPMPMEYFEHENELEKIDVNIDLSKAKK*
Ga0114351_100594714F006590N/AMKTIKIANADIPVKFGMFVLGTFLRERNLKLSDLSQLGEDLLFALELAFAGVQAGYKAKGEKCPYTLEKFCDLVDLDRGGINRITELITNEISVPEDPERKNEIAEEVS*
Ga0114351_100594719F008815N/AMPNYTERTVLSKPRDFAEVANNAGSGGVVNNNVTETINNVTVNGSAVSIFNQEFLASSSNVLTWTQNNGVLPVTNLNAAIHVYQNGQKLIDSQYSITAPATITIDSNTHYDGSNYIVFAINII*
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