Scaffold Ga0114351_1005802

Overview

Basic Information

• Taxon OID: 3300008117
• Scaffold ID: Ga0114351_1005802
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9321
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003841	Metagenome	466	Y
F006300	Metagenome	376	Y
F013882	Metagenome	267	Y
F014256	Metagenome	264	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114351_100580212	F014256	AGGTGG	MFKDGYDQLVTKLQTITGLRVSDDPRNMNPPCALVEAPTIMMATNVVADMEFRVVMTALGTGDNRTLDSLLDNIDLIRAAQIGLTDARPTTVSYGGADYPAYELTIRTKVSP*
Ga0114351_10058024	F006300	GAG	MKWQAMLEDWLKAFVAGSVAVLITSNYNVESALKAGLAAVLPMIYAWANTKDTRYGRK*
Ga0114351_10058025	F003841	GGA	MIDYAAVLTANYPGTQWAINNNEYESLQWFSDTPKPTQAELDAAWPQVDYQNQVAAVASNRRTAYETQSDGLFFEWQRGDGTEAAWREAVAAVKAANPYPTEA*
Ga0114351_10058029	F013882	GAG	VAETSVTVVGVKETLRELQRMEPELAKEIKKEFKTIVDPIVKDARSKVVNLPLSGMSRNWKGGRLMPWAQSSVSKSIIARFSNRRRGNSLAVFSVTMKSPAGTIFDMAGRGAPNRLASALSSLYGAPSRLMWPSYERNADQVNENLGRVVEKINQATTNRLTR*