Scaffold Ga0114351_1001104

Overview

Basic Information

• Taxon OID: 3300008117
• Scaffold ID: Ga0114351_1001104
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23626
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (25.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002333	Metagenome	569	Y
F002985	Metagenome / Metatranscriptome	515	Y
F043890	Metagenome / Metatranscriptome	155	Y
F067649	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114351_100110413	F002333	N/A	MTTQTLTELNAAQASIYTRTNLRRAFVEFDETDVAGIYVRDDSCVVVYRDGAERIFPKQKVKDAFLQYTHRLKDFFSYLGPNYRGPSIWHNNAYVMFKGWNYSHALGHLTSNAKLQHHWADKFIHLSDPKKVITLLQSDQTDLGHLVSPDGMRFTTGPVDMESELEDGPQANTVPNEPFCSCGSFQRQLNSLSDFQAEVQGFKPWCIHLTWFNKYRELLCKRTDVRNEARGQVSDKCVAWWYAPPGDAARDGRFLLLHTKSGPQAPLSHWRTYKPKEVFTQEHAWDLFFNMMEAGYIPFPGIALPQLSSANKK*
Ga0114351_100110414	F043890	N/A	MTTWVSKLQIECIDEEDGSMIIRIDWDGTDPDLKYWTALDPEGQEQFIIDALTAAIDCYVD*
Ga0114351_100110418	F001018	N/A	MTQITTTKLEELNILKLYEHYGALERSLPLLTPESQDLARAELETCASIRSEKVDRVYYAMASHEDALERIKKESELMVLAKRHHESQLSSLKGLLNWLRRSLPVDSNKITGRNYQFVLVKKKDLTVELSIQPEDWTEKERDDFCIEQEVTTTKQTVVRSMSGAVLEERTEPKTKVEVLPNLDAIRTAYQEGKQIPHGVKVFQEYAIRSKRIYAESRMDLQASEYPGQFLSED*
Ga0114351_100110443	F067649	N/A	MEIHISSGEWANSLMSRMNNAADGDLFCLPTPIHEHIFWIVKNASFPERQFKVEVKESQLA*
Ga0114351_10011046	F002985	N/A	MSYVIAMWKDGVPYAITACNQTNSFQLIPLDSDVALNKAFSHPYRAGAASILNWILKNESIDSAEDLSIQDEGRFRK*