Scaffold Ga0114350_1064880

Overview

Basic Information

• Taxon OID: 3300008116
• Scaffold ID: Ga0114350_1064880
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1268
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002037	Metagenome / Metatranscriptome	600	Y
F003066	Metagenome / Metatranscriptome	509	Y
F011384	Metagenome / Metatranscriptome	291	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_10648802	F002037	GAGG	MSKIYWIFGLTMVALAIFGTEKAFSQTTTIYAPDGTVTVCQVNTNGTVICL*
Ga0114350_10648804	F011384	N/A	MGLKMYTKLDDQRQAKIIIKYMETHPNCSIKELARECIINRKRIRYIASQGYFTLPKWNYNSELDKRFKNREYVSVAVGREYGKWTGY*
Ga0114350_10648806	F003066	N/A	KEPVAWLYEEYDVKSGDLKKSYLWSFHPNQLSYLNDLKNTTHHIKITPLFPGEPVEEYKGLSRYDSKRLTEAYGGL*