Scaffold Ga0114350_1039497

Overview

Basic Information

• Taxon OID: 3300008116
• Scaffold ID: Ga0114350_1039497
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1798
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011583	Metagenome	289	Y
F014137	Metagenome / Metatranscriptome	265	Y
F019136	Metagenome / Metatranscriptome	231	Y
F031867	Metagenome	181	N
F049619	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_10394972	F011583	N/A	MKGNYFNYWYKRFIKDGLKACKTIIGLGIAVGLWYSVNLPIGILFFGWVLVEALIDRN*
Ga0114350_10394973	F014137	N/A	MLIIKNIHKLIGKEYNEVFNIIGVKEYEFHYEFTLGYDASIKPAVETILLHRKQTESGMYVMEYNSKTLWLNKNEFDTIDKIIICMQTI*
Ga0114350_10394974	F031867	N/A	MQRTIEMIVKNNIELSNDSLLKQKPTRVGTHKEQNYLVYEIDNTEL*
Ga0114350_10394975	F019136	N/A	MKLTIQNYKKLEGWEHNYKDFRIGAVYETTLLYSFTIAYNKTPYIIKIFREGTITNEYEIVLRDGMDMTQYCREWIQHRKLKSFELTAMIFESLIVKCKPKAQQTTGNTNFNNPF*
Ga0114350_10394976	F049619	N/A	MLTIQNVNKILHKGLGKKNFYVARIEEQFSIDNITYSKSEYQYKFELSNMKYAITVTLNRDEWNTNTYKLQSSTGHVLYITLLDIRNMDKFLDKLRLVALG*