Basic Information | |
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Taxon OID | 3300008116 Open in IMG/M |
Scaffold ID | Ga0114350_1039497 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1798 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F011583 | Metagenome | 289 | Y |
F014137 | Metagenome / Metatranscriptome | 265 | Y |
F019136 | Metagenome / Metatranscriptome | 231 | Y |
F031867 | Metagenome | 181 | N |
F049619 | Metagenome / Metatranscriptome | 146 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114350_10394972 | F011583 | N/A | MKGNYFNYWYKRFIKDGLKACKTIIGLGIAVGLWYSVNLPIGILFFGWVLVEALIDRN* |
Ga0114350_10394973 | F014137 | N/A | MLIIKNIHKLIGKEYNEVFNIIGVKEYEFHYEFTLGYDASIKPAVETILLHRKQTESGMYVMEYNSKTLWLNKNEFDTIDKIIICMQTI* |
Ga0114350_10394974 | F031867 | N/A | MQRTIEMIVKNNIELSNDSLLKQKPTRVGTHKEQNYLVYEIDNTEL* |
Ga0114350_10394975 | F019136 | N/A | MKLTIQNYKKLEGWEHNYKDFRIGAVYETTLLYSFTIAYNKTPYIIKIFREGTITNEYEIVLRDGMDMTQYCREWIQHRKLKSFELTAMIFESLIVKCKPKAQQTTGNTNFNNPF* |
Ga0114350_10394976 | F049619 | N/A | MLTIQNVNKILHKGLGKKNFYVARIEEQFSIDNITYSKSEYQYKFELSNMKYAITVTLNRDEWNTNTYKLQSSTGHVLYITLLDIRNMDKFLDKLRLVALG* |
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