Scaffold Ga0114350_1026451

Overview

Basic Information

• Taxon OID: 3300008116
• Scaffold ID: Ga0114350_1026451
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2984
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002827	Metagenome / Metatranscriptome	527	Y
F005146	Metagenome / Metatranscriptome	410	Y
F041644	Metagenome	159	Y
F042880	Metagenome	157	Y
F051794	Metagenome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_10264512	F051794	GGAGG	MKTTDKRKANAEKRAVWLRNYQRARGRAQTRLAQQYPDQYKAILEQERLSDEAEGKAWLDITGATDNSDGVSTDTDGYDNALRSKQTDGDEQDEGDLEGEE*
Ga0114350_10264513	F005146	GGAGG	MKLINFYEVQDRKGDVAWGGASASEAVEWFRRGLDNSIYVSVWNEEDIEEPKLVIDKIDITALVLATIVGERERAR*
Ga0114350_10264515	F002827	AGGAGG	VNKEYYQAKADLCRDLFIKQVGEGDSKEAGANLIRMVNALNKLEHLKLKEEKGNE*
Ga0114350_10264517	F042880	GGAG	MANYTTVGELIEHLKGEDSNAPIIYQYYLAEHFEVSEEVFGQVARDFDSLIPCSDSYEVISKEINSKWEEANV*
Ga0114350_10264518	F041644	AGGAGG	VSLEFILDRLTSVQVGGFWALMQVITYALAIWLGLVIISKISDKRKGEGK*