Scaffold Ga0114350_1024484

Overview

Basic Information

• Taxon OID: 3300008116
• Scaffold ID: Ga0114350_1024484
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2460
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013526	Metagenome / Metatranscriptome	270	Y
F014496	Metagenome / Metatranscriptome	262	Y
F017484	Metagenome / Metatranscriptome	240	Y
F026861	Metagenome / Metatranscriptome	196	Y
F083931	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_10244842	F017484	AGGTGG	MATLEIFEMNSNGAGWVSLENASADTKLDLELAILTKAEVKMLCFKCHVEIPRGNVCVNHKDVKGAVYFD*
Ga0114350_10244843	F013526	AGGAG	LTKKNILISFVTEADTDLDAIFALNKVMYKLPESDVVKFDAFEVLDVVE*
Ga0114350_10244845	F014496	AGG	MKTYSIEDLLVGQTYFPRSLARRFQGGEITFAEKREDIWLDGYEAYAIRFRVGQSIKQNWATVAVKVAD*
Ga0114350_10244846	F026861	AGGTGG	MKLHEFQELVKKEREATRLTNLEKIAKIVITTNTPKKGKN*
Ga0114350_10244847	F083931	AGG	MTTSTYIDYPFTANGVNFISRVYSHSDMAKVIANLPEGIFAKLNQDAVSELIGDPSLLSTPELLQELTHINAGGSGAFIMLGDN*