Scaffold Ga0114350_1019931

Overview

Basic Information

• Taxon OID: 3300008116
• Scaffold ID: Ga0114350_1019931
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2801
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Leptospirillum → Leptospirillum sp. Group II (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003459	Metagenome	485	N
F098895	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_10199312	F098895	N/A	MANLLTQCNADVFKAILEVKEQSPIIGEKLISILQKHEYYWAMTFDEVMWFAAHLPWPIWDRKVHTLNSLFQSQQTTQMP*
Ga0114350_10199313	F003459	N/A	MNHLVTIPKSDISKADIADIAAGLILRIEEGEVNPIAAHVRLKAVVKALEQVLKATEDIVRDEAEKHGKTFSAFGAEIQVKEGALTPDYTHDQVWSDLQASMKAREELLKMAFRNAGKATVYDESTGEAVPVCPAKGTKPSIAVTFKAS*