Scaffold Ga0114350_1017956

Overview

Basic Information

• Taxon OID: 3300008116
• Scaffold ID: Ga0114350_1017956
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2987
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001176	Metagenome / Metatranscriptome	756	Y
F001280	Metagenome / Metatranscriptome	732	Y
F076961	Metagenome / Metatranscriptome	117	Y
F105019	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_10179562	F076961	N/A	VEEYLDEKVRRDVIKEIGNLELPEEWNPQQVIDYIIRKIEIK*
Ga0114350_10179564	F105019	AGAAG	MGKHHDKIAKSLEIRKSHHKGPGGKVPGSMNKKKTGYNRVKANGSK*
Ga0114350_10179567	F001280	AGGA	MCVECGCDKFGSETGMSKVPGGILDVTRDGEAGLTLNMTASQQERLRFINE*
Ga0114350_10179568	F001176	GAG	MSNGTGMDSPPNNEPSGAVTSAEVGRKRPSQGKFRSGISDQRSIKIDTNRHGIRRETNTGPKKTKPKKV*