Scaffold Ga0114350_1012601

Overview

Basic Information

• Taxon OID: 3300008116
• Scaffold ID: Ga0114350_1012601
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6583
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (88.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007363	Metagenome / Metatranscriptome	352	Y
F015730	Metagenome / Metatranscriptome	252	Y
F017484	Metagenome / Metatranscriptome	240	Y
F026861	Metagenome / Metatranscriptome	196	Y
F049499	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_101260110	F007363	AGGAG	MRSYSIVDLLVDQYYAPTSLRRRFNGGIINFAEKREDIYLSEGYEAFAIRYRPTGLLKDEWATVAVRVSDL*
Ga0114350_101260115	F049499	N/A	MLTMDYRMVDVLNADQLEPDDLIGFADEIIKIISISSVTDGFVLTCENEFGEKDIVEIADDEQFELYILE*
Ga0114350_10126013	F017484	AGGCGG	MTLEIFRLNESGAGWVSLDDATDSELLDLELAIVTKAEVKMLCFKCHVEIPRGNVCVNHKNVRGGIYFE*
Ga0114350_10126014	F015730	N/A	MLTEKTLNKIVYEYQHGGVKNYHPEISMGERKALLKYLFSLPSKCSAECEATHTN*
Ga0114350_10126016	F026861	AGGA	MKLDEFKKLVEAQRQQTKLTNLEKIAKIVSTTNTKKGNN*