Scaffold Ga0114350_1011819

Overview

Basic Information

• Taxon OID: 3300008116
• Scaffold ID: Ga0114350_1011819
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9527
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (88.89%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F000868	Metagenome / Metatranscriptome	853	Y
F002071	Metagenome / Metatranscriptome	596	Y
F005177	Metagenome / Metatranscriptome	409	Y
F007470	Metagenome / Metatranscriptome	350	Y
F038643	Metagenome / Metatranscriptome	165	Y
F078406	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_10118191	F000868	GGAG	MAESFLENENQMVIDAIYHEIGEQLVEDWVQSNLDEGQMYADYRFAEMSNDNYIKGRFNQFYDLKPEDQ
Ga0114350_101181914	F005177	AGGA	MKNRYRIEIYDDVKANDLTIYSETKIDKDHLTEIVFSNLRRFSGNVRAFVFDNLKKKKTTALYLPMEVIPKKTELTKLLG*
Ga0114350_101181917	F002071	AGGA	MATTLEIGQTFTTEKSGVVGVIKAVDNHPSGVARILLDVNGSERWTSVSI*
Ga0114350_101181919	F078406	AGGA	MLSTATALIQATEDSIFDEEVMGFAQAFCQHAPQLDEQQFAKSIYVYSCMLASLAVDKAMKVLLSEDEIINLMNAIDELETMRDEVMNNGE*
Ga0114350_101181920	F038643	AGGA	MSDFANWKSYPFTVEGVEFVSLIDPNGSMYSQIKRVPSQVFSQMNEQAIREIIGSISNLTKSEIQAELDKINLGYSQAYLALA*
Ga0114350_10118193	F000450	GAGG	VGDRANFGFVQPNGNTIVLYGHWAGHQMLGRLADAVIAARPRWSDPAYATRIAISQIIGNDWNSETGWGLHVNEISDNEHKIAIVDWDQQTFSLHEQDDYRNTDNKIRGMSNTAIFTMDLSTFCEKYALEGMLVN*
Ga0114350_10118195	F007470	AGGAG	MDYQDGFEDGVKFAREVIIANIRLWAESSDEGQVMDDVADRIEFGTVDYDL*
Ga0114350_10118196	F000311	GGA	MYFELTAPNQIALQRAFWSAEMMGLDPLLIAPLTFNIGTGSIEKVSSIRDTYNLKETYVSDYEPTGYTRR*