Scaffold Ga0114350_1011379

Overview

Basic Information

• Taxon OID: 3300008116
• Scaffold ID: Ga0114350_1011379
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3960
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F003582	Metagenome / Metatranscriptome	478	Y
F028150	Metagenome / Metatranscriptome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_101137910	F000473	N/A	MDSSHFKHGINLWTGEPNKPVFYNSEMAKAVRSITKPSNKLMMDIVKYPEFLALRLYEDNFIQFEGLKKEMVIDYVGKVKKLIESYGVRCELEGVPSEKVL*
Ga0114350_101137912	F000671	GAGG	MEKLLCYSCNKSKNKLNMKRSTLFPINLLMCETCITSKYEPRWVIILSGRQNGSESVREFILKKRYE
Ga0114350_10113792	F028150	AGGGGG	MNWLKKRVIAILSENFTFLGFFVAWVVLEGSAKTVVGYVTLASVAIWFMTIGIREKAEKEE*
Ga0114350_10113796	F003582	N/A	MNTYRVKLEVDAEVQAFNEDDAIDYVNDIFGVDEEIKNIKIVSVKEK*